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| Route | Train Numbers | PRIMARY SCHEDULE | SECONDARY SCHEDULE | End Points/Routing | Route Code |
| Coast Starlight | 11/14 | Los Angeles-Seattle | CL | ||
| Empire Builder | 7/8 | via Browning | via East Glacier Park | Seattle-Chicago | EB |
| 27/28 | via Browning | via East Glacier Park | Portland-Chicago | ||
| 807/808 | Minneapolis-Chicago | ||||
| Texas Eagle | 21/22 | San Antonio-Chicago | TE | ||
| 321/322 | Saint Louis-Chicago | ||||
| 421/422 | Los Angeles Thru Cars | Los Angeles Thru Cars | Los Angeles-Chicago via North Palm Springs and San Antonio | ||
| Heartland Flyer | 821/822 | | Fort Worth-Oklahoma City
| HF
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| Sunset Limited | 1/2 | Sunset Limited | Sunset Limited | Los Angeles-New Orleans | SL |
| Southwest Chief | 3/4 | Southwest Chief | Southwest Chief | Los Angeles-Chicago via Fullerton and La Plata | SC |
| California Zephyr | 5/6 | Emeryville-Chicago | CZ | ||
| Illinois Zephyr | 380/383 | Quincy-Chicago | IZ | ||
| Carl Sandburg | 381/382 | Quincy-Chicago | CS | ||
| Ann Rutledge | 313/314 | Kansas City-Saint Louis | AR | ||
| Missouri Mules | 311/316 | Kansas City-Saint Louis | MM | ||
| Lincoln Service | 300-307 | Saint Louis-Chicago | LS | ||
| Hiawatha Service | 329-342 | Monday thru Saturday | Sundays and Holidays | Milwaukee-Chicago | HS |
| Capitol Corridor | 518-553 | Weekday Eastbound | Weekday Westbound | San Jose-Auburn via Sacramento | CC |
| 720-751 | Weekend Eastbound | Weekend Westbound | |||
| Pacific Surfliner | 562-597 | Monday thru Thursday | Friday | Los Angeles-San Diego via Fullerton San Juan Capistrno and Oceanside | PS |
| 763, 768/769, 784/785, 796 | Goleta-San Diego via Los Angeles | ||||
| Central Coast Pacific Surfliner | 774/775 | San Luis Obispo-San Diego via Los Angeles | CR | ||
| 798/799 | S. L. Obispo-Los Angeles via Santa Barbara | ||||
| Amtrak Cascades | 500-501, 504, 506-509 | | Eugene-Seattle | via Portland AC
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| 510/517 | | Seattle-Vancouver, BC | via Bellingham | |||
| 513/516 | | Portland-Bellingham | via Seattle | |||
| San Joaquins | 701-704 | Sacramento-Bakersfield via Modesto and Fresno | SJ | ||
| 711-718 | | Oakland-Bakersfield | via Martinez Stockton and Fresno | |||
| Altamont Commuter Express - Joint Service | 3211 3216, 3218 | San Jose-Stockton via Fremont and Livermore | AJ | ||
| San Diego Trolley Green Line | Connections with 564, 566, 768 785, 587, and 591 | Old Town-Santee via Qualcomm Stadium and San Diego State | SD | ||
| San Diego Trolley Blue Line | Old Town-San Ysidro via Downtown San Diego | ||||
| San Diego Trolley Orange Line | | America Plaza-La Mesa Boulevard | via Southeast San Diego and Lemon Grove | |||
| America Plaza-Imperial Terminal | via Seaport Village and Convention Center | ||||
| Sprinter | Connections with Most Northbound and Southbound Surfliner Trains | Weekdays to Escondido | Weekdays to Oceanside | Oceanside-Escondido via Palomar College and Cal State San Marcos | SP |
| Weekends to Escondido | Weekends to Oceanside | ||||
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