| Route | Train Numbers | PRIMARY SCHEDULE | SECONDARY SCHEDULE | End Points/Routing | Route Code |
| Coast Starlight | 11/14 | Los Angeles-Seattle | CL | ||
| City of New Orleans | 58/59 | New Orleans-Chicago via Carbondale | CN | ||
| Empire Builder | 7/8 | via Browning | via East Glacier Park | Seattle-Chicago | EB |
| 27/28 | via Browning | via East Glacier Park | Portland-Chicago | ||
| 807/808 | Minneapolis-Chicago | ||||
| Texas Eagle | 21/22 | San Antonio-Chicago | TE | ||
| 321/322 | Saint Louis-Chicago | ||||
| 421/422 | Los Angeles Thru Cars | Los Angeles Thru Cars | Los Angeles-Chicago via North Palm Springs and San Antonio | ||
| Heartland Flyer | 821/822 | | Fort Worth-Oklahoma City
| HF
| | |
| Saluki | 390/391 | Carbondale-Chicago via Champaign-Urbana | SK | ||
| Sunset Limited | 1/2 | Sunset Limited | Sunset Limited | Los Angeles-New Orleans | SL |
| Southwest Chief | 3/4 | Southwest Chief | Southwest Chief | Los Angeles-Chicago via Fullerton and La Plata | SC |
| California Zephyr | 5/6 | Emeryville-Chicago | CZ | ||
| Illini | 392/393 | Carbondale-Chicago via Champaign-Urbana | IL | ||
| Illinois Zephyr | 380/383 | Quincy-Chicago | IZ | ||
| Carl Sandburg | 381/382 | Quincy-Chicago | CS | ||
| Ann Rutledge | 313/314 | Kansas City-Saint Louis | AR | ||
| Missouri Mules | 311/316 | Kansas City-Saint Louis | MM | ||
| Lincoln Service | 300-307 | Saint Louis-Chicago | LS | ||
| Hiawatha Service | 329-342 | Monday thru Saturday to Chicago | Monday thru Saturday to Milwaukee | Milwaukee-Chicago | HS |
| Sundays and Holidays to Chicago | Sundays and Holidays to Milwaukee | ||||
| Capitol Corridor | 518-553 | Weekday Eastbound | Weekday Westbound | San Jose-Auburn via Sacramento | CC |
| 720-751 | Weekend Eastbound | Weekend Westbound | |||
| Pacific Surfliner | 562-597 | Monday thru Thursday | Friday | Los Angeles-San Diego via Fullerton San Juan Capistrno and Oceanside | PS |
| 763, 768/769, 784/785, 796 | Goleta-San Diego via Los Angeles | ||||
| Central Coast Pacific Surfliner | 774/775 | San Luis Obispo-San Diego via Los Angeles | CR | ||
| 798/799 | S. L. Obispo-Los Angeles via Santa Barbara | ||||
| Amtrak Cascades | 500, 504, 507, 509 | | Eugene-Seattle | via Portland AC
| | |
| 501, 506, 508 | Portland-Seattle via Centralia | ||||
| 510/517 | | Seattle-Vancouver, BC | via Bellingham | |||
| 513/516 | | Portland-Bellingham | via Seattle | |||
| San Joaquins | 701-704 | Sacramento-Bakersfield via Modesto and Fresno | SJ | ||
| 711-718 | | Oakland-Bakersfield | via Martinez Stockton and Fresno | |||
| Altamont Commuter Express - Joint Service | 3211 3216, 3218, 3220, 3288 | San Jose-Stockton via Fremont and Livermore | AJ | ||
| San Diego Trolley Green Line | Connections with Amtrak at Santa Fe Depot and All Coaster Service Trains at Both Old Town and San Diego Old Town Connections From/to Amtrak trains 564, 566, 768 and 785, 587, 591 are Available Weekends and holidays only, | Monday thru Thursday to Santee | Monday thru Thursday to Old Town | Old Town-Santee via Qualcomm Stadium and San Diego State | SD |
| Fridays to Santee | Friday to Old Town | ||||
| Saturday to Santee | Saturday to Old Town | ||||
| Sunday to Santee | Sunday to Old Town | ||||
| San Diego Trolley Blue Line | Monday Thru Thursday to San Ysidro | Monday thru Thursday to Old Town | Old Town-San Ysidro via Downtown San Diego | ||
| Friday to San Ysidro | Friday to Old Town | ||||
| Saturday to San Ysidro | Saturday to Old Town | ||||
| Sunday to San Ysidro | Sunday to Old Town | ||||
| Monday thru Thursday to San Ysidro | Monday thru Thursday to Santa Fe Depot | San Diego to San Ysidro via National City and Chula Vista | |||
| Friday to San Ysidro | Friday To Santa Fe Depot | ||||
| Weekends To San Ysidro | Weekends to Santa Fe Depot | ||||
| San Diego Trolley Orange Line | Monday Thru Thursday To La Mesa Boulevard | Monday Thru Thursday To America Plaza | America Plaza-La Mesa Boulevard El Cajon and Gillespie Field via Southeast San Diego and Lemon Grove | ||
| Monday Thru Thursday to Gillespie Field | Monday Thru Thursday to America Plaza | ||||
| Friday to La Mesa Boulevard | Friday to America Plaza | ||||
| Friday to Gillespie Field | Friday to America Plaza | ||||
| Saturday to La Mesa Boulevard | Saturdays to America Plaza | ||||
| Saturday to Gillespie Field | Saturday to America Plaza | ||||
| Sundays to La Mesa Boulevard | Sundays to America Plaza | ||||
| Sundays to Gillespie Field | Sundays to America Plaza | ||||
| Monday Thru Thursday to Imperial Terminal | Monay Thru Thursday to America Plaza | America Plaza-Imperial Terminal via Seaport Village and Convention Center | |||
| Fridays to Imperial Terminal | Fridays to America Plaza | ||||
| Saturdays to Imperial Terminal | Saturdays to America Plaza | ||||
| Sundays to Imperial Terminal | Sundays to America Plaza | ||||
Sprinter
| Connections with Most Northbound and Southbound Surfliner, Coaster, and Metrolink Trains
| Oceanside-Escondido via Palomar College | and Cal State San Marcos SP
| | ||
| Monday thru Thursday to Oceanside | Fridays to Oceanside | ||||
| Saturdays to Oceanside | Saturday to Escondido | ||||
| Sundays to Oceanside | Sundays to Escondido | ||||
